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Looking for a low-carb, versatile, and filling meal prep? These Egg Muffins are your answer! With three delicious Egg Muffins flavors—Spinach Tomato & Mozzarella, Bacon & Cheddar, and Garlic Mushroom & Peppers—you’ll have something to satisfy all palates and add variety to your breakfast. Perfect for any time of the day, they’re ideal when you need a quick grab-and-go option.
While eggs are a breakfast favorite, not every morning allows for a steaming pan of Shakshuka. That’s where these protein-packed egg muffins come in! Just like mini frittatas, they can be cooked ahead and refrigerated for when you need them most.

What Sets These Egg Muffins Apart?
What makes these Egg Muffins truly stand out among food blogs? They’re easy to throw together, delicious, and filling yet not unhealthy, just like these Cauliflower Hash Brown Egg Cups. So, what else could this recipe do to go the extra mile? Well, if you’re like us and love having eggs for breakfast every morning, this recipe will shake up your routine with mini frittatas that you’ll never tire of.
You might wonder, how come? This Egg Muffins recipe offers enough variety to keep you satisfied because it’s a 3-in-1 recipe, featuring three adaptations of Egg Muffins designed to please everyone at your next breakfast:
- Spinach Tomato & Mozzarella
- Bacon & Cheddar
- Garlic Mushroom & Peppers
The combination of fresh ingredients and creative flavor profiles makes this recipe a must-try for anyone looking to elevate their breakfast game.
Delicious Egg Muffins: Key Ingredients
The secret to these Egg Muffins lies in their key ingredients. Each one brings something special to create three unique and flavorful versions of this breakfast staple. Let’s dive into what makes this recipe truly exceptional:
- Eggs: Start with the freshest, highest-quality eggs you can find. Look for ones with a deep, rich yolk to ensure a creamy texture and vibrant flavor in your muffins.
- Spinach Tomato & Mozzarella: This combination offers a delightful mix of fresh, juicy tomatoes and tender spinach, balanced with the creamy goodness of mozzarella. Use ripe tomatoes and fresh spinach leaves for the best results.
- Bacon & Cheddar: A classic pairing that never fails, the smoky bacon and sharp cheddar cheese create a savory explosion in every bite. Opt for thick-cut bacon and a good-quality, aged cheddar for maximum flavor.
- Garlic Mushroom & Peppers: Packed with earthy mushrooms, sweet bell peppers, and a hint of garlic, this combo is bursting with umami and vibrant colors. Choose firm mushrooms and fresh, crisp peppers to elevate the taste.
*Note: In this recipe, the flavor combinations above result in three delicious variations. Check the Recipe Card at the bottom for a complete list of ingredients and measurements.
Making Perfect Egg Muffins: Step-By-Step Guide
Ready to whip up some delicious Egg Muffins? Follow these simple steps with images to guide you through the process. You’ll create fluffy, flavorful muffins with three unique flavor profiles that are perfect for any time of day. Let’s get started and impress your taste buds with these easy-to-make breakfast delights.
- Preheat Oven: Preheat oven to 350°F (180°C). Lightly spray a 12-cup muffin tin with nonstick oil spray.
- Whisk Eggs: In a large bowl, whisk together eggs and onion. Season with salt and pepper to taste.
*Note: Make sure to grease your muffin tin properly and use a good-quality non-stick muffin tray. If you’re unsure, use parchment paper or cupcake liners to prevent sticking.
- Fill Muffin Tins: Add the egg mixture halfway up into each tin of the greased muffin tin.
- Add Toppings: Divide the three topping combinations into four muffin cups each.
*Note: The muffins will puff up as they bake, so be sure to fill the tins only three-quarters full to prevent overflow.
- Bake Muffins: Bake for 15-20 minutes until set.
- Serve or Store: Let cool slightly, then serve.
*Note: Allow your muffins to cool for about 10 minutes before removing them. If needed, run a plastic knife or spatula around the inside walls of the muffin holes to help loosen them.
And there you have it—your delicious Egg Muffins are ready to be enjoyed! I hope you loved making these versatile breakfast treats. If you’re in the mood for more tasty ideas, why not explore other fabulous recipes on Cafe Delites?
From the irresistible Caprese Frittata, packed with fresh tomatoes and basil, to the hearty and satisfying Spanish Tortilla, loaded with potatoes and onions, there’s something to delight every palate. And don’t forget the flavoursome Shrimp Cakes, perfect for a quick and tasty lunch.
Recipe FAQ’s
For the best results, reheat them gently in the microwave for about 15-20 seconds if thawed, or 1-2 minutes if frozen. Ensure they’re hot and warmed through to the center.
Absolutely! Feel free to mix and match ingredients to suit your taste. Experiment with different vegetables, cheeses, and proteins to create your perfect egg muffin.
Let the muffins cool completely and pack them into airtight containers. Store in the refrigerator for up to 3 days. For convenience, use smaller containers for individual servings.
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Egg Muffins: 3 Easy Meal Prep Ideas For Breakfast
Ingredients
- 12 eggs large
- 2 tbsp onion finely chopped, red, white, or yellow brown
- 1 pinch salt to taste
- 1 pinch pepper to taste
TOMATO SPINACH MOZZARELLA
- 1/4 cup spinach fresh, roughly chopped
- 8 grape tomatoes or cherry tomatoes, halved
- 1/4 cup shredded mozzarella cheese
BACON CHEDDAR
- 1/4 cup cooked bacon chopped
- 1/4 cup shredded cheddar cheese
GARLIC MUSHROOM PEPPER
- 1/4 cup brown mushrooms sliced
- 1/4 cup red bell pepper diced
- 1 tbsp parsley freshly chopped
- 1/4 teaspoon garlic powder or 1/3 teaspoon of miced garlic
Instructions
- Preheat oven to 350°F | 180°C. Lightly spray a 12-cup capacity muffin tin with nonstick oil spray.
- In a large bowl, whisk together eggs and onion. Season with salt and pepper, to taste.
- Add egg mixture halfway up into each tin of a greased muffin tin.
- Divide the three topping combinations into 4 muffin cups each.
- Bake for 15-20 minutes, until set.
- Let cool slightly, then serve OR store in an airtight container in the refrigerator for up to 4 days and reheat when ready to serve.
- Enjoy
Notes
- Grease your muffin tin properly and use a good quality non stick muffin tray. If in doubt, use parchment paper or cupcake liners to prevent sticking.
Nutrition
Nutrition information is automatically calculated, so should only be used as an approximation.
I used sautéed mushrooms in some of mine, and they were quite watery. Should I use raw mushrooms instead of sautéing them first? The bacon and cheese ones turned out perfectly and were everyone’s favorite!
Must get a silicone muffin tin. They just fall out. Delicious.Gayle
Lovely recipe, and such a time saver! I just wanted to Post a quick tip. I go to the salad bar at my local market and select a spoonful of this and a spoonful of that, making it cheap and easy to utilize a variety of veggies, cheeses, etc in these egg cups. The best part is, they are already clean and prepared!
Wonderful idea! Thank you.
Great idea!
What a fantastic idea! Thanks!
– Teresa
Excellent in every way…easy and quick to make, versatile, the perfect finger food for breakfast. I made mine with cherry tomatoes, spinach, sweet red peppers, red onions and Tajin seasoning. Came out perfect the first time!
My new favorite way to have eggs!! Peppers, cheese, sausage, tomato and avocado. Fantastic. I used 4 eggs and a splash of milk. And filled 4 of my 6 large muffin tin. At 17 minutes it seemed perfect, thank you!
Made these tonight using my Pampered Chef brownie pan. Turned out great!
Used deli ham, Parmesan and cheddar cheese, onions, garlic, diced jalapeños and several different Trader Joe’s spice blends.
Quick, easy and fun to eat! 😊
I rarely ever leave comments but I just had to for this one because these turned out INCREDIBLE! The prep is easy but it does take quite a bit of time, overall definitely worth it though because you get delicious breakfast for days in one go!!! Thank you so much for sharing this recipe!
Thanks for the recipe. My first batch is just out of the oven. They are delicious! I made my own topping with swiss cheese, brocoli rice and small ham cubes. So good!
Looking forward to finding my next favorite recipe on your site! 😀
I made these with mushroom, spinach, really fine onion, bacon, tomato, and cheddar jack cheese. That was the first batch. The second batch I made tomato, cheddar, and jalapeno. Of course I had a few spices in there too.They were delish!!!
Added ham, green peppers, and onions to mine. Turned out good. Any tips on getting them out of the pan better? I sprayed a ton of baking spray on my pans, but it still stuck to the bottom, other than that I love this recipe.